Data Analysis
The core provides assistance in experimental design and data processing pipelines for high-throughput datasets generated in individual projects, particularly for DNA/RNA sequencing data. Our assistance falls broadly into the categories outlined below.
Experimental Design and Power Analysis
Conduct in silico experiments to assess power and sensitivity/specificity in the experimental design.
Benchmarking
The Core will use both public data and internal data as basis for simulation studies to provide PIs with comprehensive prediction of possible outcome in their experiments to ensure efficient use of these technologies
Technology Assessment
In collaboration with staff in the sequencing core facility (Center for Genomics and Proteomics CGP ) our staff will also provide guidance on technologies; for example, selection of single end/paired-end sequencing, multiplexing, sequencing depth, sample pooling etc.